raptor::cutoff Class Reference

Public Member Functions
	cutoff (cutoff &&)=default
	cutoff (cutoff const &)=default
	cutoff (prepare_arguments const &arguments)
uint8_t	get (std::filesystem::path const &filename) const noexcept
cutoff &	operator= (cutoff &&)=default
cutoff &	operator= (cutoff const &)=default

Static Public Member Functions
static bool	file_is_compressed (std::filesystem::path const &filepath)

Private Types
enum class	cutoff_kinds { fixed , filesize_dependent }

Private Member Functions
uint8_t	impl (std::filesystem::path const &filename) const

Static Private Member Functions
static bool	check_for_fasta_format (std::filesystem::path const &filepath, std::vector< std::string > const &valid_extensions=seqan3::format_fasta::file_extensions)

Private Attributes
cutoff_kinds	cutoff_kind {cutoff_kinds::fixed}
uint8_t	fixed_cutoff {}

Static Private Attributes
static constexpr std::array< uint64_t, 4 > const	cutoff_bounds
static constexpr std::array< uint8_t, 4 > const	cutoffs {1u, 3u, 10u, 20u}

Member Data Documentation

cutoff_bounds

std::array<uint64_t, 4> const raptor::cutoff::cutoff_bounds

staticconstexprprivate

Initial value:

{314'572'800ULL,
                                                                 524'288'000ULL,
                                                                 1'073'741'824ULL,
                                                                 3'221'225'472ULL}

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The documentation for this class was generated from the following file:

• cutoff.hpp