Uses of Interface
org.forester.io.parsers.IteratingPhylogenyParser
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Packages that use IteratingPhylogenyParser Package Description org.forester.io.parsers.nexus org.forester.io.parsers.nhx org.forester.rio -
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Uses of IteratingPhylogenyParser in org.forester.io.parsers.nexus
Classes in org.forester.io.parsers.nexus that implement IteratingPhylogenyParser Modifier and Type Class Description class
NexusPhylogeniesParser
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Uses of IteratingPhylogenyParser in org.forester.io.parsers.nhx
Classes in org.forester.io.parsers.nhx that implement IteratingPhylogenyParser Modifier and Type Class Description class
NHXParser
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Uses of IteratingPhylogenyParser in org.forester.rio
Methods in org.forester.rio with parameters of type IteratingPhylogenyParser Modifier and Type Method Description static RIO
RIO. executeAnalysis(IteratingPhylogenyParser p, java.io.File species_tree_file, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, java.lang.String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO
RIO. executeAnalysis(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, java.lang.String outgroup, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO
RIO. executeAnalysis(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, java.lang.String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
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