Class TwoBitSequenceReader<C extends NucleotideCompound>

  • All Implemented Interfaces:
    java.lang.Iterable<C>, Accessioned, ProxySequenceReader<C>, Sequence<C>, SequenceReader<C>

    public class TwoBitSequenceReader<C extends NucleotideCompound>
    extends BitSequenceReader<C>
    Implementation of the 2bit encoding. This will default to the following encodings:
    • 0 - T
    • 1 - C
    • 2 - A
    • 3 - G
    We also do not support case sensitive encodings therefore if you pass a lowercased a this will be treated as if it is an uppercase A and we will erase that information.
    Author:
    ayates