Uses of Interface
org.forester.util.DescriptiveStatistics
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Packages that use DescriptiveStatistics Package Description org.forester.archaeopteryx.phylogeny.data org.forester.msa org.forester.pccx org.forester.phylogeny org.forester.surfacing org.forester.util -
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Uses of DescriptiveStatistics in org.forester.archaeopteryx.phylogeny.data
Methods in org.forester.archaeopteryx.phylogeny.data with parameters of type DescriptiveStatistics Modifier and Type Method Description static RenderableVector
RenderableVector. createInstance(java.util.List<java.lang.Double> values, DescriptiveStatistics stats, Configuration configuration)
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Uses of DescriptiveStatistics in org.forester.msa
Methods in org.forester.msa that return DescriptiveStatistics Modifier and Type Method Description static DescriptiveStatistics
MsaMethods. calcBasicGapinessStatistics(Msa msa)
static DescriptiveStatistics
MsaMethods. calcNumberOfGapsStats(Msa msa)
static DescriptiveStatistics
MsaMethods. calculateEffectiveLengthStatistics(Msa msa)
static DescriptiveStatistics
MsaMethods. calculateIdentityRatio(int from, int to, Msa msa)
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Uses of DescriptiveStatistics in org.forester.pccx
Constructors in org.forester.pccx with parameters of type DescriptiveStatistics Constructor Description ExternalNodeBasedCoverage(DescriptiveStatistics stats, double average_raw_score, CoverageCalculationOptions options)
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Uses of DescriptiveStatistics in org.forester.phylogeny
Methods in org.forester.phylogeny that return DescriptiveStatistics Modifier and Type Method Description static DescriptiveStatistics
PhylogenyMethods. calculateBranchLengthStatistics(Phylogeny phy)
static DescriptiveStatistics
PhylogenyMethods. calculateNumberOfDescendantsPerNodeStatistics(Phylogeny phy)
Methods in org.forester.phylogeny that return types with arguments of type DescriptiveStatistics Modifier and Type Method Description static java.util.List<DescriptiveStatistics>
PhylogenyMethods. calculateConfidenceStatistics(Phylogeny phy)
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Uses of DescriptiveStatistics in org.forester.surfacing
Methods in org.forester.surfacing that return types with arguments of type DescriptiveStatistics Modifier and Type Method Description java.util.List<DescriptiveStatistics>
DomainLengths. getLengthStatisticsList()
Methods in org.forester.surfacing with parameters of type DescriptiveStatistics Modifier and Type Method Description static void
SurfacingUtil. domainsPerProteinsStatistics(java.lang.String genome, java.util.List<Protein> protein_list, DescriptiveStatistics all_genomes_domains_per_potein_stats, java.util.SortedMap<java.lang.Integer,java.lang.Integer> all_genomes_domains_per_potein_histo, java.util.SortedSet<java.lang.String> domains_which_are_always_single, java.util.SortedSet<java.lang.String> domains_which_are_sometimes_single_sometimes_not, java.util.SortedSet<java.lang.String> domains_which_never_single, java.io.Writer writer)
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Uses of DescriptiveStatistics in org.forester.util
Classes in org.forester.util that implement DescriptiveStatistics Modifier and Type Class Description class
BasicDescriptiveStatistics
Constructors in org.forester.util with parameters of type DescriptiveStatistics Constructor Description AsciiHistogram(DescriptiveStatistics stats)
AsciiHistogram(DescriptiveStatistics stats, java.lang.String title)
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